WormBase Tree Display for CDS: PPA19330
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| PPA19330 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (14) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S589-0.13 | ||
| DB_remark | PPA-EXP-2 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF02214 (BTB/POZ domain); contains similarity to Interpro domains IPR003971 (Potassium channel, voltage dependent, Kv9), IPR028325 (), IPR003968 (Potassium channel, voltage dependent, Kv), IPR005821 (Ion transport domain), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR027359 (Voltage-dependent channel domain superfamily), IPR003131 (Potassium channel tetramerisation-type BTB domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00108884 | ||||
| Corresponding_transcript | PPA19330.1 | |||||
| Corresponding_protein | PP65199 | |||||
| Corresponding_oligo_set | GPL14372_Probes_12682 | |||||
| GPL14372_Probes_12683 | ||||||
| GPL14372_Probes_12684 | ||||||
| GPL14372_Probes_12685 | ||||||
| GPL14372_Probes_12686 | ||||||
| Microarray_results | GPL14372_Probes_12682 | |||||
| GPL14372_Probes_12683 | ||||||
| GPL14372_Probes_12684 | ||||||
| GPL14372_Probes_12685 | ||||||
| GPL14372_Probes_12686 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S589-0.13 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
