WormBase Tree Display for CDS: PPA19413
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PPA19413 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (50) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-39.40 | ||
TREEFAM | TREEFAM_ID | TF313149 | ||||
DB_remark | PPA-KIN-4 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF08926 (Domain of unknown function (DUF1908)), PF17820 (PDZ domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR041489 (PDZ domain 6), IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR015022 (Microtubule-associated serine/threonine-protein kinase, pre-PK domain), IPR000719 (Protein kinase domain), IPR023142 (Microtubule-associated serine/threonine-protein kinase, pre-PK domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00108967 | ||||
Corresponding_transcript | PPA19413.1 | |||||
Corresponding_protein | PP59144 | |||||
Corresponding_oligo_set | GPL14372_Probes_89507 | |||||
GPL14372_Probes_89508 | ||||||
GPL14372_Probes_89509 | ||||||
GPL14372_Probes_89510 | ||||||
GPL14372_Probes_89511 | ||||||
GPL14372_Probes_89512 | ||||||
Microarray_results | GPL14372_Probes_89507 | |||||
GPL14372_Probes_89508 | ||||||
GPL14372_Probes_89509 | ||||||
GPL14372_Probes_89510 | ||||||
GPL14372_Probes_89511 | ||||||
GPL14372_Probes_89512 | ||||||
RNASeq_FPKM | WBls:0000032 | 5.96818 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-39.40 | Curator_confirmed | WBPerson4055 | |||
Method | curated |