WormBase Tree Display for CDS: PPA19802
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PPA19802 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (20) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S341-3.90 | ||
DB_remark | PPA-DGK-3 protein; contains similarity to Pfam domains PF00130 (Phorbol esters/diacylglycerol binding domain (C1 domain)), PF00609 (Diacylglycerol kinase accessory domain), PF00781 (Diacylglycerol kinase catalytic domain), PF14513 (Diacylglycerol kinase N-terminus); contains similarity to Interpro domains IPR002048 (EF-hand domain), IPR000756 (Diacylglycerol kinase, accessory domain), IPR017438 (Inorganic polyphosphate/ATP-NAD kinase, N-terminal), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR011992 (EF-hand domain pair), IPR029477 (Diacylglycerol kinase type I, N-terminal), IPR038199 (DGK type I, N-terminal domain superfamily), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR037607 (Diacylglycerol kinase), IPR016064 (NAD kinase/diacylglycerol kinase-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00109356 | ||||
Corresponding_transcript | PPA19802.1 | |||||
Corresponding_protein | PP51488 | |||||
Corresponding_oligo_set | GPL14372_Probes_17140 | |||||
GPL14372_Probes_17141 | ||||||
GPL14372_Probes_17143 | ||||||
Microarray_results | GPL14372_Probes_17140 | |||||
GPL14372_Probes_17141 | ||||||
GPL14372_Probes_17143 | ||||||
RNASeq_FPKM | WBls:0000032 | 14.1972 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.31477 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S341-3.90 | Curator_confirmed | WBPerson4055 | |||
Method | curated |