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WormBase Tree Display for CDS: PPA19975

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Name Class

PPA19975EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequencePPA_ChrIII
StructureSource_exons (12)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S66-4.53
TREEFAMTREEFAM_IDTF312878
DB_remarkPPA-AMDH-1 protein; contains similarity to Pfam domain PF01979 (Amidohydrolase family); contains similarity to Interpro domains IPR032466 (Metal-dependent hydrolase), IPR011059 (Metal-dependent hydrolase, composite domain superfamily), IPR006680 (Amidohydrolase-related), IPR005920 (Imidazolonepropionase)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00109529
Corresponding_transcriptPPA19975.1
Corresponding_proteinPP75156
Corresponding_oligo_setGPL14372_Probes_67087
GPL14372_Probes_67088
GPL14372_Probes_67089
GPL14372_Probes_67090
GPL14372_Probes_67091
Microarray_resultsGPL14372_Probes_67087
GPL14372_Probes_67088
GPL14372_Probes_67089
GPL14372_Probes_67090
GPL14372_Probes_67091
RNASeq_FPKMWBls:00000325.98974From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010149.521From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Last_reviewed11 Sep 2019 16:36:01WBPerson4055
Remark[171116 mh6] renamed from gene-UMM-S66-4.53Curator_confirmedWBPerson4055
[190911 mh6] This CDS has been updated based on the RNAseq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated