WormBase Tree Display for CDS: PPA19975
expand all nodes | collapse all nodes | view schema
PPA19975 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrIII | |||
Structure | Source_exons (12) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S66-4.53 | ||
TREEFAM | TREEFAM_ID | TF312878 | ||||
DB_remark | PPA-AMDH-1 protein; contains similarity to Pfam domain PF01979 (Amidohydrolase family); contains similarity to Interpro domains IPR032466 (Metal-dependent hydrolase), IPR011059 (Metal-dependent hydrolase, composite domain superfamily), IPR006680 (Amidohydrolase-related), IPR005920 (Imidazolonepropionase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00109529 | ||||
Corresponding_transcript | PPA19975.1 | |||||
Corresponding_protein | PP75156 | |||||
Corresponding_oligo_set | GPL14372_Probes_67087 | |||||
GPL14372_Probes_67088 | ||||||
GPL14372_Probes_67089 | ||||||
GPL14372_Probes_67090 | ||||||
GPL14372_Probes_67091 | ||||||
Microarray_results | GPL14372_Probes_67087 | |||||
GPL14372_Probes_67088 | ||||||
GPL14372_Probes_67089 | ||||||
GPL14372_Probes_67090 | ||||||
GPL14372_Probes_67091 | ||||||
RNASeq_FPKM | WBls:0000032 | 5.98974 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 49.521 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 11 Sep 2019 16:36:01 | WBPerson4055 | ||||
Remark | [171116 mh6] renamed from gene-UMM-S66-4.53 | Curator_confirmed | WBPerson4055 | |||
[190911 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |