WormBase Tree Display for CDS: PPA20030
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PPA20030 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 137 | |||
208 | 292 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2840-77.14 | ||
TREEFAM | TREEFAM_ID | TF300720 | ||||
DB_remark | PPA-CTH-2 protein; contains similarity to Pfam domain PF01053 (Cys/Met metabolism PLP-dependent enzyme); contains similarity to Interpro domains IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR015422 (Pyridoxal phosphate-dependent transferase, small domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00109584 | ||||
Corresponding_transcript | PPA20030.1 | |||||
Corresponding_protein | PP66834 | |||||
Corresponding_oligo_set | GPL14372_Probes_32370 | |||||
Microarray_results | GPL14372_Probes_32370 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2840-77.14 | Curator_confirmed | WBPerson4055 | |||
Method | curated |