WormBase Tree Display for CDS: PPA20087
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PPA20087 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S139-6.52 | ||
TREEFAM | TREEFAM_ID | TF319848 | ||||
DB_remark | PPA-ENDU-1 protein; contains similarity to Pfam domain PF09412 (Endoribonuclease XendoU); contains similarity to Interpro domains IPR037227 (Endoribonuclease EndoU-like), IPR018998 (EndoU ribonuclease, C-terminal), IPR039787 (Poly(U)-specific endoribonuclease) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00109641 | ||||
Corresponding_transcript | PPA20087.1 | |||||
Corresponding_protein | PP52626 | |||||
Corresponding_oligo_set | GPL14372_Probes_87000 | |||||
GPL14372_Probes_87001 | ||||||
GPL14372_Probes_87002 | ||||||
GPL14372_Probes_87003 | ||||||
Microarray_results | GPL14372_Probes_87000 | |||||
GPL14372_Probes_87001 | ||||||
GPL14372_Probes_87002 | ||||||
GPL14372_Probes_87003 | ||||||
RNASeq_FPKM | WBls:0000032 | 27.7598 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.36826 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S139-6.52 | Curator_confirmed | WBPerson4055 | |||
Method | curated |