WormBase Tree Display for CDS: PPA20109
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PPA20109 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (17) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-5.25 | ||
DB_remark | PPA-ENSH-1 protein; contains similarity to Pfam domain PF00147 (Fibrinogen beta and gamma chains, C-terminal globular domain); contains similarity to Interpro domains IPR002181 (Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain), IPR036056 (Fibrinogen-like, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00109663 | ||||
Corresponding_transcript | PPA20109.1 | |||||
Corresponding_protein | PP63750 | |||||
Corresponding_oligo_set | GPL14372_Probes_87050 | |||||
GPL14372_Probes_87051 | ||||||
GPL14372_Probes_87054 | ||||||
Microarray_results | GPL14372_Probes_87050 | |||||
GPL14372_Probes_87051 | ||||||
GPL14372_Probes_87054 | ||||||
RNASeq_FPKM | WBls:0000032 | 17.3852 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 11.7331 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-5.25 | Curator_confirmed | WBPerson4055 | |||
Method | curated |