WormBase Tree Display for CDS: PPA20127
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| PPA20127 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (43) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S139-4.44 | ||
| DB_remark | PPA-BRE-5 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain), PF01344 (Kelch motif), PF01762 (Galactosyltransferase); contains similarity to Interpro domains IPR000210 (BTB/POZ domain), IPR002659 (Glycosyl transferase, family 31), IPR006652 (Kelch repeat type 1), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR015915 (Kelch-type beta propeller) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00109681 | ||||
| Corresponding_transcript | PPA20127.1 | |||||
| Corresponding_protein | PP51070 | |||||
| Corresponding_oligo_set | GPL14372_Probes_30619 | |||||
| GPL14372_Probes_30620 | ||||||
| GPL14372_Probes_30621 | ||||||
| GPL14372_Probes_30622 | ||||||
| GPL14372_Probes_30623 | ||||||
| GPL14372_Probes_30624 | ||||||
| GPL14372_Probes_87072 | ||||||
| GPL14372_Probes_87073 | ||||||
| GPL14372_Probes_87075 | ||||||
| Matching_cDNA | AW052318 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_30619 | |||||
| GPL14372_Probes_30620 | ||||||
| GPL14372_Probes_30621 | ||||||
| GPL14372_Probes_30622 | ||||||
| GPL14372_Probes_30623 | ||||||
| GPL14372_Probes_30624 | ||||||
| GPL14372_Probes_87072 | ||||||
| GPL14372_Probes_87073 | ||||||
| GPL14372_Probes_87075 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S139-4.44 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
