WormBase Tree Display for CDS: PPA20135
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PPA20135 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 116 | |||
395 | 491 | |||||
2394 | 2542 | |||||
3780 | 3822 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-3.54 | ||
TREEFAM | TREEFAM_ID | TF314214 | ||||
DB_remark | contains similarity to Pfam domain PF02807 (ATP:guanido phosphotransferase, N-terminal domain); contains similarity to Interpro domains IPR022413 (ATP:guanido phosphotransferase, N-terminal), IPR036802 (ATP:guanido phosphotransferase, N-terminal domain superfamily), IPR000749 (ATP:guanido phosphotransferase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00109689 | ||||
Corresponding_transcript | PPA20135.1 | |||||
Corresponding_protein | PP54570 | |||||
Corresponding_oligo_set | GPL14372_Probes_87087 | |||||
Microarray_results | GPL14372_Probes_87087 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-3.54 | Curator_confirmed | WBPerson4055 | |||
Method | curated |