WormBase Tree Display for CDS: PPA20169
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PPA20169 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (94) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-2.41 | ||
DB_remark | contains similarity to Pfam domains PF01522 (Polysaccharide deacetylase), PF01683 (EB module); contains similarity to Interpro domains IPR011330 (Glycoside hydrolase/deacetylase, beta/alpha-barrel), IPR006149 (EB domain), IPR000742 (EGF-like domain), IPR006150 (Cysteine-rich repeat), IPR002509 (NodB homology domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00109723 | ||||
Corresponding_transcript | PPA20169.1 | |||||
Corresponding_protein | PP57246 | |||||
Corresponding_oligo_set | GPL14372_Probes_30657 | |||||
GPL14372_Probes_87129 | ||||||
GPL14372_Probes_87130 | ||||||
GPL14372_Probes_87132 | ||||||
Microarray_results | GPL14372_Probes_30657 | |||||
GPL14372_Probes_87129 | ||||||
GPL14372_Probes_87130 | ||||||
GPL14372_Probes_87132 | ||||||
RNASeq_FPKM | WBls:0000032 | 0.322475 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-2.41 | Curator_confirmed | WBPerson4055 | |||
Method | curated |