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WormBase Tree Display for CDS: PPA20169

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Name Class

PPA20169SMapS_parentSequencePPA_ChrI
StructureSource_exons (94)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S139-2.41
DB_remarkcontains similarity to Pfam domains PF01522 (Polysaccharide deacetylase), PF01683 (EB module); contains similarity to Interpro domains IPR011330 (Glycoside hydrolase/deacetylase, beta/alpha-barrel), IPR006149 (EB domain), IPR000742 (EGF-like domain), IPR006150 (Cysteine-rich repeat), IPR002509 (NodB homology domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00109723
Corresponding_transcriptPPA20169.1
Corresponding_proteinPP57246
Corresponding_oligo_setGPL14372_Probes_30657
GPL14372_Probes_87129
GPL14372_Probes_87130
GPL14372_Probes_87132
Microarray_resultsGPL14372_Probes_30657
GPL14372_Probes_87129
GPL14372_Probes_87130
GPL14372_Probes_87132
RNASeq_FPKMWBls:00000320.322475From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S139-2.41Curator_confirmedWBPerson4055
Methodcurated