WormBase Tree Display for CDS: PPA20178
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PPA20178 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (19) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-1.11 | ||
TREEFAM | TREEFAM_ID | TF315490 | ||||
DB_remark | PPA-LGC-53 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00109732 | ||||
Corresponding_transcript | PPA20178.1 | |||||
Corresponding_protein | PP54988 | |||||
Corresponding_oligo_set | GPL14372_Probes_30663 | |||||
GPL14372_Probes_87144 | ||||||
Microarray_results | GPL14372_Probes_30663 | |||||
GPL14372_Probes_87144 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-1.11 | Curator_confirmed | WBPerson4055 | |||
Method | curated |