WormBase Tree Display for CDS: PPA20294
expand all nodes | collapse all nodes | view schema
PPA20294 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
Inferred_automatically | make_isoforms.pl | |||||
SMap | S_parent | Sequence | PPA_ChrX | |||
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2857-2.11 | ||
DB_remark | PPA-NUCB-1 protein; contains similarity to Pfam domain PF13499 (EF-hand domain pair); contains similarity to Interpro domains IPR002048 (EF-hand domain), IPR040250 (Nucleobindin), IPR011992 (EF-hand domain pair) | |||||
Origin | From_laboratory | HX | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00109848 | ||||
Corresponding_transcript | PPA20294.1 | |||||
Corresponding_protein | PP75337 | |||||
Corresponding_oligo_set | GPL14372_Probes_76631 | |||||
GPL14372_Probes_76632 | ||||||
Microarray_results | GPL14372_Probes_76631 | |||||
GPL14372_Probes_76632 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.73608 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 25 Sep 2019 10:56:09 | WBPerson4055 | ||||
Remark | [171116 mh6] renamed from gene-UMM-S2857-2.11 | Curator_confirmed | WBPerson4055 | |||
[190925 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |