WormBase Tree Display for CDS: PPA20433
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| PPA20433 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (20) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S2844-40.7 | ||
| TREEFAM | TREEFAM_ID | TF300693 | ||||
| DB_remark | PPA-SEC-23 protein; contains similarity to Pfam domains PF00626 (Gelsolin repeat), PF04811 (Sec23/Sec24 trunk domain), PF04815 (Sec23/Sec24 helical domain), PF08033 (Sec23/Sec24 beta-sandwich domain); contains similarity to Interpro domains IPR036465 (von Willebrand factor A-like domain superfamily), IPR006896 (Sec23/Sec24, trunk domain), IPR029006 (ADF-H/Gelsolin-like domain superfamily), IPR036180 (Gelsolin-like domain superfamily), IPR037364 (Protein transport protein Sec23), IPR007123 (Gelsolin-like domain), IPR006900 (Sec23/Sec24, helical domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR036175 (Sec23/Sec24 helical domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00109987 | ||||
| Corresponding_transcript | PPA20433.1 | |||||
| Corresponding_protein | PP58296 | |||||
| Corresponding_oligo_set | GPL14372_Probes_91098 | |||||
| GPL14372_Probes_91101 | ||||||
| GPL14372_Probes_91103 | ||||||
| Microarray_results | GPL14372_Probes_91098 | |||||
| GPL14372_Probes_91101 | ||||||
| GPL14372_Probes_91103 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S2844-40.7 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
