WormBase Tree Display for CDS: PPA20698
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PPA20698 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Structure | Source_exons (18) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2845-14.31 | ||
DB_remark | contains similarity to Pfam domains PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain), PF00090 (Thrombospondin type 1 domain), PF06468 (Spondin_N); contains similarity to Interpro domains IPR036383 (Thrombospondin type-1 (TSP1) repeat superfamily), IPR036880 (Pancreatic trypsin inhibitor Kunitz domain superfamily), IPR000884 (Thrombospondin type-1 (TSP1) repeat), IPR038678 (Spondin, N-terminal domain superfamily), IPR002223 (Pancreatic trypsin inhibitor Kunitz domain), IPR009465 (Spondin, N-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00110252 | ||||
Corresponding_transcript | PPA20698.1 | |||||
Corresponding_protein | PP74097 | |||||
Corresponding_oligo_set | GPL14372_Probes_22350 | |||||
GPL14372_Probes_22351 | ||||||
GPL14372_Probes_22352 | ||||||
GPL14372_Probes_22353 | ||||||
GPL14372_Probes_22354 | ||||||
GPL14372_Probes_22355 | ||||||
GPL14372_Probes_22357 | ||||||
Microarray_results | GPL14372_Probes_22350 | |||||
GPL14372_Probes_22351 | ||||||
GPL14372_Probes_22352 | ||||||
GPL14372_Probes_22353 | ||||||
GPL14372_Probes_22354 | ||||||
GPL14372_Probes_22355 | ||||||
GPL14372_Probes_22357 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2845-14.31 | Curator_confirmed | WBPerson4055 | |||
Method | curated |