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WormBase Tree Display for CDS: PPA20698

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Name Class

PPA20698SMapS_parentSequencePPA_ChrX
StructureSource_exons (18)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2845-14.31
DB_remarkcontains similarity to Pfam domains PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain), PF00090 (Thrombospondin type 1 domain), PF06468 (Spondin_N); contains similarity to Interpro domains IPR036383 (Thrombospondin type-1 (TSP1) repeat superfamily), IPR036880 (Pancreatic trypsin inhibitor Kunitz domain superfamily), IPR000884 (Thrombospondin type-1 (TSP1) repeat), IPR038678 (Spondin, N-terminal domain superfamily), IPR002223 (Pancreatic trypsin inhibitor Kunitz domain), IPR009465 (Spondin, N-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00110252
Corresponding_transcriptPPA20698.1
Corresponding_proteinPP74097
Corresponding_oligo_setGPL14372_Probes_22350
GPL14372_Probes_22351
GPL14372_Probes_22352
GPL14372_Probes_22353
GPL14372_Probes_22354
GPL14372_Probes_22355
GPL14372_Probes_22357
Microarray_resultsGPL14372_Probes_22350
GPL14372_Probes_22351
GPL14372_Probes_22352
GPL14372_Probes_22353
GPL14372_Probes_22354
GPL14372_Probes_22355
GPL14372_Probes_22357
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2845-14.31Curator_confirmedWBPerson4055
Methodcurated