WormBase Tree Display for CDS: PPA20939
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PPA20939 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 142 | |||
305 | 390 | |||||
617 | 751 | |||||
794 | 897 | |||||
959 | 1082 | |||||
1133 | 1252 | |||||
1513 | 1644 | |||||
1728 | 1830 | |||||
2052 | 2206 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-55.61 | ||
DB_remark | contains similarity to Pfam domain PF00646 (F-box domain); contains similarity to Interpro domains IPR036047 (F-box-like domain superfamily), IPR001810 (F-box domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00110493 | ||||
Corresponding_transcript | PPA20939.1 | |||||
Corresponding_protein | PP54918 | |||||
Corresponding_oligo_set | GPL14372_Probes_16551 | |||||
GPL14372_Probes_16552 | ||||||
GPL14372_Probes_16553 | ||||||
GPL14372_Probes_16555 | ||||||
Microarray_results | GPL14372_Probes_16551 | |||||
GPL14372_Probes_16552 | ||||||
GPL14372_Probes_16553 | ||||||
GPL14372_Probes_16555 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-55.61 | Curator_confirmed | WBPerson4055 | |||
Method | curated |