WormBase Tree Display for CDS: PPA20946
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PPA20946 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (80) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S10-56.32 | ||
DB_remark | contains similarity to Pfam domains PF13520 (Amino acid permease), PF13906 (C-terminus of AA_permease); contains similarity to Interpro domains IPR029485 (Cationic amino acid transporter, C-terminal), IPR002293 (Amino acid/polyamine transporter I) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00110500 | ||||
Corresponding_transcript | PPA20946.1 | |||||
Corresponding_protein | PP62808 | |||||
Corresponding_oligo_set (12) | ||||||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.05439 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S10-56.32 | Curator_confirmed | WBPerson4055 | |||
Method | curated |