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WormBase Tree Display for CDS: PPA20960

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Name Class

PPA20960SMapS_parentSequencePPA_ChrII
StructureSource_exons (35)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S10-57.23
TREEFAMTREEFAM_IDTF313892
DB_remarkPPA-RML-4 protein; contains similarity to Pfam domains PF00378 (Enoyl-CoA hydratase/isomerase), PF00887 (Acyl CoA binding protein), PF16363 (GDP-mannose 4,6 dehydratase); contains similarity to Interpro domains IPR035984 (Acyl-CoA binding protein superfamily), IPR014748 (Enoyl-CoA hydratase, C-terminal), IPR014352 (FERM/acyl-CoA-binding protein superfamily), IPR036291 (NAD(P)-binding domain superfamily), IPR001753 (Enoyl-CoA hydratase/isomerase), IPR000582 (Acyl-CoA-binding protein, ACBP), IPR029045 (ClpP/crotonase-like domain superfamily), IPR016040 (NAD(P)-binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00110514
Corresponding_transcriptPPA20960.1
Corresponding_proteinPP65664
Corresponding_oligo_setGPL14372_Probes_65478
GPL14372_Probes_65479
GPL14372_Probes_65480
GPL14372_Probes_65481
GPL14372_Probes_65482
GPL14372_Probes_65483
GPL14372_Probes_65484
GPL14372_Probes_65485
GPL14372_Probes_65486
Microarray_resultsGPL14372_Probes_65478
GPL14372_Probes_65479
GPL14372_Probes_65480
GPL14372_Probes_65481
GPL14372_Probes_65482
GPL14372_Probes_65483
GPL14372_Probes_65484
GPL14372_Probes_65485
GPL14372_Probes_65486
RNASeq_FPKMWBls:000003211.4716From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010127.0947From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S10-57.23Curator_confirmedWBPerson4055
Methodcurated