WormBase Tree Display for CDS: PPA20960
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PPA20960 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (35) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-57.23 | ||
TREEFAM | TREEFAM_ID | TF313892 | ||||
DB_remark | PPA-RML-4 protein; contains similarity to Pfam domains PF00378 (Enoyl-CoA hydratase/isomerase), PF00887 (Acyl CoA binding protein), PF16363 (GDP-mannose 4,6 dehydratase); contains similarity to Interpro domains IPR035984 (Acyl-CoA binding protein superfamily), IPR014748 (Enoyl-CoA hydratase, C-terminal), IPR014352 (FERM/acyl-CoA-binding protein superfamily), IPR036291 (NAD(P)-binding domain superfamily), IPR001753 (Enoyl-CoA hydratase/isomerase), IPR000582 (Acyl-CoA-binding protein, ACBP), IPR029045 (ClpP/crotonase-like domain superfamily), IPR016040 (NAD(P)-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00110514 | ||||
Corresponding_transcript | PPA20960.1 | |||||
Corresponding_protein | PP65664 | |||||
Corresponding_oligo_set | GPL14372_Probes_65478 | |||||
GPL14372_Probes_65479 | ||||||
GPL14372_Probes_65480 | ||||||
GPL14372_Probes_65481 | ||||||
GPL14372_Probes_65482 | ||||||
GPL14372_Probes_65483 | ||||||
GPL14372_Probes_65484 | ||||||
GPL14372_Probes_65485 | ||||||
GPL14372_Probes_65486 | ||||||
Microarray_results | GPL14372_Probes_65478 | |||||
GPL14372_Probes_65479 | ||||||
GPL14372_Probes_65480 | ||||||
GPL14372_Probes_65481 | ||||||
GPL14372_Probes_65482 | ||||||
GPL14372_Probes_65483 | ||||||
GPL14372_Probes_65484 | ||||||
GPL14372_Probes_65485 | ||||||
GPL14372_Probes_65486 | ||||||
RNASeq_FPKM | WBls:0000032 | 11.4716 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 27.0947 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-57.23 | Curator_confirmed | WBPerson4055 | |||
Method | curated |