WormBase Tree Display for CDS: PPA21018
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| PPA21018 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (40) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-60.6 | ||
| TREEFAM | TREEFAM_ID | TF342903 | ||||
| DB_remark | PPA-CLR-1 protein; contains similarity to Pfam domain PF00102 (Protein-tyrosine phosphatase); contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR003599 (Immunoglobulin subtype), IPR003961 (Fibronectin type III), IPR029021 (Protein-tyrosine phosphatase-like), IPR013783 (Immunoglobulin-like fold), IPR000242 (Tyrosine-specific protein phosphatase, PTPase domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR036116 (Fibronectin type III superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00110572 | ||||
| Corresponding_transcript | PPA21018.1 | |||||
| Corresponding_protein | PP67633 | |||||
| Corresponding_oligo_set | GPL14372_Probes_16648 | |||||
| GPL14372_Probes_16649 | ||||||
| GPL14372_Probes_16650 | ||||||
| GPL14372_Probes_16651 | ||||||
| Microarray_results | GPL14372_Probes_16648 | |||||
| GPL14372_Probes_16649 | ||||||
| GPL14372_Probes_16650 | ||||||
| GPL14372_Probes_16651 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-60.6 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
