WormBase Tree Display for CDS: PPA21042

PPA21042 SMap: S_parent: Sequence: PPA_ChrII
  Structure: Source_exons (38)
  DB_info: Database: pristionchus.org cds gene-UMM-S10-68.27
    DB_remark: PPA-CRN-3 protein; contains similarity to Pfam domains PF00570 (HRDC domain), PF01138 (3' exoribonuclease family, domain 1), PF01612 (3'-5' exonuclease), PF08066 (PMC2NT (NUC016) domain); contains similarity to Interpro domains IPR010997 (HRDC-like superfamily), IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR027408 (PNPase/RNase PH domain superfamily), IPR012337 (Ribonuclease H-like superfamily), IPR002121 (HRDC domain), IPR012588 (Exosome-associated factor Rrp6, N-terminal), IPR001247 (Exoribonuclease, phosphorolytic domain 1), IPR002562 (3'-5' exonuclease domain)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00110596
    Corresponding_transcript: PPA21042.1
    Corresponding_protein: PP52091
    Corresponding_oligo_set: GPL14372_Probes_51707
      GPL14372_Probes_58552
      GPL14372_Probes_58553
      GPL14372_Probes_58555
      GPL14372_Probes_58556
      GPL14372_Probes_58558
      GPL14372_Probes_58559
      GPL14372_Probes_58560
      GPL14372_Probes_58562
    Microarray_results: GPL14372_Probes_51707
      GPL14372_Probes_58552
      GPL14372_Probes_58553
      GPL14372_Probes_58555
      GPL14372_Probes_58556
      GPL14372_Probes_58558
      GPL14372_Probes_58559
      GPL14372_Probes_58560
      GPL14372_Probes_58562
    RNASeq_FPKM: WBls:0000032 3.87441 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 13.7263 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMM-S10-68.27 Curator_confirmed: WBPerson4055
  Method: curated