WormBase Tree Display for CDS: PPA21204
expand all nodes | collapse all nodes | view schema
PPA21204 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (51) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-45.30 | ||
DB_remark | contains similarity to Pfam domains PF00096 (Zinc finger, C2H2 type), PF00135 (Carboxylesterase family), PF10326 (Serpentine type 7TM GPCR chemoreceptor Str); contains similarity to Interpro domains IPR029058 (Alpha/Beta hydrolase fold), IPR002018 (Carboxylesterase, type B), IPR036236 (Zinc finger C2H2 superfamily), IPR013087 (Zinc finger C2H2-type), IPR019428 (7TM GPCR, serpentine receptor class r (Str)) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00110758 | ||||
Corresponding_transcript | PPA21204.1 | |||||
Corresponding_protein | PP61108 | |||||
Corresponding_oligo_set (12) | ||||||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 3.02521 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S41-45.30 | Curator_confirmed | WBPerson4055 | |||
Method | curated |