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WormBase Tree Display for CDS: PPA21288

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Name Class

PPA21288SMapS_parentSequencePPA_ChrII
StructureSource_exons (30)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S10-53.15
TREEFAMTREEFAM_IDTF315490
DB_remarkPPA-LGC-56 protein; contains similarity to Pfam domains PF00085 (Thioredoxin), PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR013766 (Thioredoxin domain), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR036249 (Thioredoxin-like superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
Start_not_found1
VisibleGeneWBGene00110842
Corresponding_transcriptPPA21288.1
Corresponding_proteinPP54942
Corresponding_oligo_setGPL14372_Probes_26328
GPL14372_Probes_26329
GPL14372_Probes_81170
Microarray_resultsGPL14372_Probes_26328
GPL14372_Probes_26329
GPL14372_Probes_81170
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S10-53.15Curator_confirmedWBPerson4055
Methodcurated