WormBase Tree Display for CDS: PPA21293
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PPA21293 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S10-53.18 | ||
DB_remark | PPA-RFIP-1 protein; contains similarity to Pfam domain PF09457 (FIP domain); contains similarity to Interpro domains IPR019018 (Rab-binding domain FIP-RBD), IPR037245 (FIP-RBD, C-terminal domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00110847 | ||||
Corresponding_transcript | PPA21293.1 | |||||
Corresponding_protein | PP52570 | |||||
Corresponding_oligo_set | GPL14372_Probes_26333 | |||||
GPL14372_Probes_26334 | ||||||
GPL14372_Probes_26335 | ||||||
Microarray_results | GPL14372_Probes_26333 | |||||
GPL14372_Probes_26334 | ||||||
GPL14372_Probes_26335 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S10-53.18 | Curator_confirmed | WBPerson4055 | |||
Method | curated |