WormBase Tree Display for CDS: PPA21345
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| PPA21345 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (15) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-67.35 | ||
| DB_remark | PPA-CEY-1 protein; contains similarity to Pfam domains PF00313 ('Cold-shock' DNA-binding domain), PF02214 (BTB/POZ domain); contains similarity to Interpro domains IPR000210 (BTB/POZ domain), IPR012340 (Nucleic acid-binding, OB-fold), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR011129 (Cold shock domain), IPR003131 (Potassium channel tetramerisation-type BTB domain), IPR002059 (Cold-shock protein, DNA-binding) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00110899 | ||||
| Corresponding_transcript | PPA21345.1 | |||||
| Corresponding_protein | PP73751 | |||||
| Corresponding_oligo_set | GPL14372_Probes_58496 | |||||
| GPL14372_Probes_58497 | ||||||
| GPL14372_Probes_58498 | ||||||
| GPL14372_Probes_58500 | ||||||
| GPL14372_Probes_58501 | ||||||
| Matching_cDNA | AW052421 | Inferred_automatically | transcript_builder.pl | |||
| AW097267 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_58496 | |||||
| GPL14372_Probes_58497 | ||||||
| GPL14372_Probes_58498 | ||||||
| GPL14372_Probes_58500 | ||||||
| GPL14372_Probes_58501 | ||||||
| RNASeq_FPKM | WBls:0000032 | 9.71393 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-67.35 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
