WormBase Tree Display for CDS: PPA21394
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PPA21394 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (79) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-73.3 | ||
DB_remark | PPA-LIN-61 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF02820 (mbt repeat), PF05773 (RWD domain), PF13393 (Histidyl-tRNA synthetase); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR006575 (RWD domain), IPR004092 (Mbt repeat), IPR000719 (Protein kinase domain), IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR041715 (Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00110948 | ||||
Corresponding_transcript | PPA21394.1 | |||||
Corresponding_protein | PP58082 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA | AW114119 | Inferred_automatically | transcript_builder.pl | |||
AW144988 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 13.4655 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 13.3366 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-73.3 | Curator_confirmed | WBPerson4055 | |||
Method | curated |