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WormBase Tree Display for CDS: PPA21394

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Name Class

PPA21394SMapS_parentSequencePPA_ChrI
StructureSource_exons (79)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S7-73.3
DB_remarkPPA-LIN-61 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF02820 (mbt repeat), PF05773 (RWD domain), PF13393 (Histidyl-tRNA synthetase); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR006575 (RWD domain), IPR004092 (Mbt repeat), IPR000719 (Protein kinase domain), IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR041715 (Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
Start_not_found1
VisibleGeneWBGene00110948
Corresponding_transcriptPPA21394.1
Corresponding_proteinPP58082
Corresponding_oligo_set (12)
Matching_cDNAAW114119Inferred_automaticallytranscript_builder.pl
AW144988Inferred_automaticallytranscript_builder.pl
Microarray_results (12)
RNASeq_FPKMWBls:000003213.4655From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010113.3366From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S7-73.3Curator_confirmedWBPerson4055
Methodcurated