WormBase Tree Display for CDS: PPA21645
expand all nodes | collapse all nodes | view schema
PPA21645 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 54 | |||
260 | 371 | |||||
487 | 616 | |||||
660 | 777 | |||||
821 | 937 | |||||
982 | 1071 | |||||
1118 | 1216 | |||||
1264 | 1377 | |||||
1421 | 1500 | |||||
1544 | 1703 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-5.7 | ||
DB_remark | contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain), PF02752 (Arrestin (or S-antigen), C-terminal domain); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011022 (Arrestin C-terminal-like domain), IPR014752 (Arrestin-like, C-terminal), IPR011021 (Arrestin-like, N-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00111199 | ||||
Corresponding_transcript | PPA21645.1 | |||||
Corresponding_protein | PP54250 | |||||
Corresponding_oligo_set | GPL14372_Probes_77647 | |||||
GPL14372_Probes_77648 | ||||||
GPL14372_Probes_77649 | ||||||
GPL14372_Probes_77650 | ||||||
Microarray_results | GPL14372_Probes_77647 | |||||
GPL14372_Probes_77648 | ||||||
GPL14372_Probes_77649 | ||||||
GPL14372_Probes_77650 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.41257 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 13.133 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-5.7 | Curator_confirmed | WBPerson4055 | |||
Method | curated |