WormBase Tree Display for CDS: PPA21650
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PPA21650 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (20) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-5.19 | ||
TREEFAM | TREEFAM_ID | TF313435 | ||||
DB_remark | contains similarity to Pfam domain PF00069 (Protein kinase domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR011989 (Armadillo-like helical), IPR000719 (Protein kinase domain), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00111204 | ||||
Corresponding_transcript | PPA21650.1 | |||||
Corresponding_protein | PP55339 | |||||
Corresponding_oligo_set | GPL14372_Probes_77632 | |||||
GPL14372_Probes_77633 | ||||||
Matching_cDNA | AW052660 | Inferred_automatically | transcript_builder.pl | |||
BQ088317 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_77632 | |||||
GPL14372_Probes_77633 | ||||||
RNASeq_FPKM | WBls:0000032 | 6.62026 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.90922 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-5.19 | Curator_confirmed | WBPerson4055 | |||
Method | curated |