WormBase Tree Display for CDS: PPA21651
expand all nodes | collapse all nodes | view schema
PPA21651 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (12) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-5.29 | ||
DB_remark | PPA-LIM-6 protein; contains similarity to Pfam domains PF00046 (Homeodomain), PF00412 (LIM domain); contains similarity to Interpro domains IPR001781 (Zinc finger, LIM-type), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00111205 | ||||
Corresponding_transcript | PPA21651.1 | |||||
Corresponding_protein | PP70209 | |||||
Corresponding_oligo_set | GPL14372_Probes_77630 | |||||
GPL14372_Probes_77631 | ||||||
Microarray_results | GPL14372_Probes_77630 | |||||
GPL14372_Probes_77631 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 21.3421 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-5.29 | Curator_confirmed | WBPerson4055 | |||
Method | curated |