WormBase Tree Display for CDS: PPA21658
expand all nodes | collapse all nodes | view schema
PPA21658 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 21 | |||
99 | 212 | |||||
261 | 352 | |||||
431 | 539 | |||||
601 | 720 | |||||
765 | 848 | |||||
868 | 915 | |||||
1125 | 1160 | |||||
1205 | 1263 | |||||
1328 | 1391 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-8.59 | ||
TREEFAM | TREEFAM_ID | TF319103 | ||||
DB_remark | contains similarity to Pfam domain PF00595 (PDZ domain); contains similarity to Interpro domains IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR040264 (Uncharacterized protein T15H9.4-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00111212 | ||||
Corresponding_transcript | PPA21658.1 | |||||
Corresponding_protein | PP57216 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 10.5121 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-8.59 | Curator_confirmed | WBPerson4055 | |||
Method | curated |