WormBase Tree Display for CDS: PPA21698
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| PPA21698 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (19) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-7.56 | ||
| DB_remark | contains similarity to Pfam domains PF00085 (Thioredoxin), PF04777 (Erv1 / Alr family), PF18108 (QSOX Trx-like domain); contains similarity to Interpro domains IPR017905 (ERV/ALR sulfhydryl oxidase domain), IPR039798 (Sulfhydryl oxidase), IPR013766 (Thioredoxin domain), IPR041269 (Sulfhydryl oxidase, Trx-like domain), IPR036249 (Thioredoxin-like superfamily), IPR042568 (Sulfhydryl oxidase, flavin adenine dinucleotide (FAD) binding domain superfamily), IPR036774 (ERV/ALR sulfhydryl oxidase domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00111252 | ||||
| Corresponding_transcript | PPA21698.1 | |||||
| Corresponding_protein | PP62466 | |||||
| Corresponding_oligo_set | GPL14372_Probes_77450 | |||||
| GPL14372_Probes_77451 | ||||||
| GPL14372_Probes_77452 | ||||||
| GPL14372_Probes_77453 | ||||||
| Microarray_results | GPL14372_Probes_77450 | |||||
| GPL14372_Probes_77451 | ||||||
| GPL14372_Probes_77452 | ||||||
| GPL14372_Probes_77453 | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.11311 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 4.99128 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S207-7.56 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
