WormBase Tree Display for CDS: PPA21720
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PPA21720 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (28) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-8.69 | ||
DB_remark | PPA-PHO-14.1 protein; contains similarity to Pfam domains PF00328 (Histidine phosphatase superfamily (branch 2)), PF00503 (G-protein alpha subunit); contains similarity to Interpro domains IPR011025 (G protein alpha subunit, helical insertion), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR000560 (Histidine phosphatase superfamily, clade-2), IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR029033 (Histidine phosphatase superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00111274 | ||||
Corresponding_transcript | PPA21720.1 | |||||
Corresponding_protein | PP55663 | |||||
Corresponding_oligo_set | GPL14372_Probes_77361 | |||||
GPL14372_Probes_77362 | ||||||
GPL14372_Probes_77364 | ||||||
Microarray_results | GPL14372_Probes_77361 | |||||
GPL14372_Probes_77362 | ||||||
GPL14372_Probes_77364 | ||||||
RNASeq_FPKM | WBls:0000032 | 8.34044 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.64163 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-8.69 | Curator_confirmed | WBPerson4055 | |||
Method | curated |