WormBase Tree Display for CDS: PPA21724
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| PPA21724 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (16) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S207-9.69 | ||
| TREEFAM | TREEFAM_ID | TF315770 | ||||
| DB_remark | PPA-HST-2 protein; contains similarity to Pfam domains PF00096 (Zinc finger, C2H2 type), PF03567 (Sulfotransferase family), PF12874 (Zinc-finger of C2H2 type); contains similarity to Interpro domains IPR005331 (Sulfotransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR036236 (Zinc finger C2H2 superfamily), IPR007734 (Heparan sulphate 2-O-sulfotransferase), IPR013087 (Zinc finger C2H2-type) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00111278 | ||||
| Corresponding_transcript | PPA21724.1 | |||||
| Corresponding_protein | PP70115 | |||||
| Corresponding_oligo_set | GPL14372_Probes_77344 | |||||
| GPL14372_Probes_77347 | ||||||
| GPL14372_Probes_77350 | ||||||
| GPL14372_Probes_77352 | ||||||
| GPL14372_Probes_77353 | ||||||
| Matching_cDNA | FG095602 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_77344 | |||||
| GPL14372_Probes_77347 | ||||||
| GPL14372_Probes_77350 | ||||||
| GPL14372_Probes_77352 | ||||||
| GPL14372_Probes_77353 | ||||||
| RNASeq_FPKM | WBls:0000032 | 6.53165 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 43.713 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S207-9.69 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
