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WormBase Tree Display for CDS: PPA21780

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Name Class

PPA21780SMapS_parentSequencePPA_ChrI
StructureSource_exons (37)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S207-11.22
DB_remarkcontains similarity to Pfam domain PF00112 (Papain family cysteine protease); contains similarity to Interpro domains IPR001478 (PDZ domain), IPR038765 (Papain-like cysteine peptidase superfamily), IPR036034 (PDZ superfamily), IPR040264 (Uncharacterized protein T15H9.4-like), IPR000668 (Peptidase C1A, papain C-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
End_not_found
VisibleGeneWBGene00111334
Corresponding_transcriptPPA21780.1
Corresponding_proteinPP56333
Corresponding_oligo_set (16)
Matching_cDNAFE935164Inferred_automaticallytranscript_builder.pl
Microarray_results (16)
RNASeq_FPKMWBls:00000324.51404From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.19846From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S207-11.22Curator_confirmedWBPerson4055
Methodcurated