WormBase Tree Display for CDS: PPA21780
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PPA21780 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (37) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-11.22 | ||
DB_remark | contains similarity to Pfam domain PF00112 (Papain family cysteine protease); contains similarity to Interpro domains IPR001478 (PDZ domain), IPR038765 (Papain-like cysteine peptidase superfamily), IPR036034 (PDZ superfamily), IPR040264 (Uncharacterized protein T15H9.4-like), IPR000668 (Peptidase C1A, papain C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
End_not_found | ||||||
Visible | Gene | WBGene00111334 | ||||
Corresponding_transcript | PPA21780.1 | |||||
Corresponding_protein | PP56333 | |||||
Corresponding_oligo_set (16) | ||||||
Matching_cDNA | FE935164 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (16) | ||||||
RNASeq_FPKM | WBls:0000032 | 4.51404 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.19846 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-11.22 | Curator_confirmed | WBPerson4055 | |||
Method | curated |