WormBase Tree Display for CDS: PPA21802
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PPA21802 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 45 | |||
140 | 235 | |||||
278 | 345 | |||||
440 | 553 | |||||
564 | 582 | |||||
644 | 703 | |||||
755 | 850 | |||||
906 | 1248 | |||||
1389 | 1603 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-12.32 | ||
DB_remark | contains similarity to Pfam domain PF00096 (Zinc finger, C2H2 type); contains similarity to Interpro domains IPR036236 (Zinc finger C2H2 superfamily), IPR013087 (Zinc finger C2H2-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00111356 | ||||
Corresponding_transcript | PPA21802.1 | |||||
Corresponding_protein | PP56436 | |||||
Corresponding_oligo_set | GPL14372_Probes_77120 | |||||
GPL14372_Probes_77121 | ||||||
GPL14372_Probes_77122 | ||||||
GPL14372_Probes_77123 | ||||||
GPL14372_Probes_77124 | ||||||
Microarray_results | GPL14372_Probes_77120 | |||||
GPL14372_Probes_77121 | ||||||
GPL14372_Probes_77122 | ||||||
GPL14372_Probes_77123 | ||||||
GPL14372_Probes_77124 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 40.2302 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-12.32 | Curator_confirmed | WBPerson4055 | |||
Method | curated |