WormBase Tree Display for CDS: PPA21812
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| PPA21812 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (46) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-13.19 | ||
| TREEFAM | TREEFAM_ID | TF320555 | ||||
| DB_remark | contains similarity to Pfam domains PF00293 (NUDIX domain), PF02104 (SURF1 family), PF03071 (GNT-I family), PF18290 (Nudix hydrolase domain); contains similarity to Interpro domains IPR002994 (Surfeit locus 1/Shy1), IPR004139 (Glycosyl transferase, family 13), IPR029044 (Nucleotide-diphospho-sugar transferases), IPR015797 (NUDIX hydrolase-like domain superfamily), IPR040618 (Pre-nudix hydrolase domain), IPR000086 (NUDIX hydrolase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00111366 | ||||
| Corresponding_transcript | PPA21812.1 | |||||
| Corresponding_protein | PP62826 | |||||
| Corresponding_oligo_set | GPL14372_Probes_77095 | |||||
| GPL14372_Probes_77096 | ||||||
| GPL14372_Probes_77097 | ||||||
| GPL14372_Probes_77098 | ||||||
| GPL14372_Probes_77099 | ||||||
| Matching_cDNA | AW115415 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_77095 | |||||
| GPL14372_Probes_77096 | ||||||
| GPL14372_Probes_77097 | ||||||
| GPL14372_Probes_77098 | ||||||
| GPL14372_Probes_77099 | ||||||
| RNASeq_FPKM | WBls:0000032 | 12.8119 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 39.7157 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S207-13.19 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
