WormBase Tree Display for CDS: PPA21830
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PPA21830 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (30) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-14.52 | ||
DB_remark | contains similarity to Pfam domain PF01545 (Cation efflux family); contains similarity to Interpro domains IPR002524 (Cation efflux protein), IPR036837 (Cation efflux protein, cytoplasmic domain superfamily), IPR027469 (Cation efflux transmembrane domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00111384 | ||||
Corresponding_transcript | PPA21830.1 | |||||
Corresponding_protein | PP73344 | |||||
Corresponding_oligo_set (11) | ||||||
Matching_cDNA | FE934365 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 26.481 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.77306 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-14.52 | Curator_confirmed | WBPerson4055 | |||
Method | curated |