WormBase Tree Display for CDS: PPA21850
expand all nodes | collapse all nodes | view schema
| PPA21850 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrII | |||
| Structure | Source_exons (14) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S421-2.153 | ||
| TREEFAM | TREEFAM_ID | TF105920 | ||||
| DB_remark | contains similarity to Pfam domains PF10637 (Oxoglutarate and iron-dependent oxygenase degradation C-term), PF13661 (2OG-Fe(II) oxygenase superfamily); contains similarity to Interpro domains IPR006620 (Prolyl 4-hydroxylase, alpha subunit), IPR039558 (Prolyl 3,4-dihydroxylase TPA1/OFD1, N-terminal domain), IPR019601 (Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00111404 | ||||
| Corresponding_transcript | PPA21850.1 | |||||
| Corresponding_protein | PP75256 | |||||
| Corresponding_oligo_set | GPL14372_Probes_64694 | |||||
| Microarray_results | GPL14372_Probes_64694 | |||||
| RNASeq_FPKM | WBls:0000032 | 15.8137 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 62.2565 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 11 Sep 2019 13:53:39 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S421-2.153 | Curator_confirmed | WBPerson4055 | |||
| [190911 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
