WormBase Tree Display for CDS: PPA21866
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PPA21866 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (16) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-36.21 | ||
DB_remark | contains similarity to Pfam domains PF00385 (Chromo (CHRromatin Organisation MOdifier) domain), PF12140 (SLED domain); contains similarity to Interpro domains IPR023780 (Chromo domain), IPR016197 (Chromo-like domain superfamily), IPR021987 (SLED domain), IPR000953 (Chromo/chromo shadow domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00111420 | ||||
Corresponding_transcript | PPA21866.1 | |||||
Corresponding_protein | PP52187 | |||||
Corresponding_oligo_set | GPL14372_Probes_720 | |||||
GPL14372_Probes_723 | ||||||
GPL14372_Probes_724 | ||||||
Microarray_results | GPL14372_Probes_720 | |||||
GPL14372_Probes_723 | ||||||
GPL14372_Probes_724 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-36.21 | Curator_confirmed | WBPerson4055 | |||
Method | curated |