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WormBase Tree Display for CDS: PPA21927

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Name Class

PPA21927EvidenceCurator_confirmedWBPerson4055
Inferred_automaticallymake_isoforms.pl
SMapS_parentSequencePPA_ChrX
StructureSource_exons (19)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S322-4.3
DB_remarkcontains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
OriginFrom_laboratoryHX
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00111481
Corresponding_transcriptPPA21927.1
Corresponding_proteinPP75473
Corresponding_oligo_setGPL14372_Probes_32167
GPL14372_Probes_32168
GPL14372_Probes_89139
GPL14372_Probes_89140
GPL14372_Probes_89141
Microarray_resultsGPL14372_Probes_32167
GPL14372_Probes_32168
GPL14372_Probes_89139
GPL14372_Probes_89140
GPL14372_Probes_89141
RNASeq_FPKMWBls:000003227.0855From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Last_reviewed08 Oct 2019 16:37:48WBPerson4055
Remark[171116 mh6] renamed from gene-UMM-S322-4.3Curator_confirmedWBPerson4055
[191008 mh6] This gene has been split based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated