WormBase Tree Display for CDS: PPA22053
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| PPA22053 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons | 1 | 130 | |||
| 208 | 266 | |||||
| 539 | 646 | |||||
| 857 | 952 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-14.9 | ||
| DB_remark | contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00111607 | ||||
| Corresponding_transcript | PPA22053.1 | |||||
| Corresponding_protein | PP75298 | |||||
| Corresponding_oligo_set | GPL14372_Probes_49634 | |||||
| GPL14372_Probes_49636 | ||||||
| Matching_cDNA | FG099355 | Inferred_automatically | transcript_builder.pl | |||
| FG095326 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_49634 | |||||
| GPL14372_Probes_49636 | ||||||
| RNASeq_FPKM | WBls:0000032 | 147.808 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 87.3056 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 16 Sep 2019 15:01:38 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S71-14.9 | Curator_confirmed | WBPerson4055 | |||
| [190916 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
