WormBase Tree Display for CDS: PPA22253
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| PPA22253 | SMap | S_parent | Sequence | PPA_ChrIII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (24) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S521-0.43 | ||
| DB_remark | PPA-GAB-1 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR002289 (Gamma-aminobutyric-acid A receptor, beta subunit), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00111807 | ||||
| Corresponding_transcript | PPA22253.1 | |||||
| Corresponding_protein | PP56223 | |||||
| Corresponding_oligo_set | GPL14372_Probes_64884 | |||||
| GPL14372_Probes_64886 | ||||||
| Microarray_results | GPL14372_Probes_64884 | |||||
| GPL14372_Probes_64886 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.73789 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S521-0.43 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
