WormBase Tree Display for CDS: PPA22305
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PPA22305 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 76 | |||
259 | 377 | |||||
704 | 797 | |||||
915 | 1042 | |||||
1246 | 1380 | |||||
1457 | 1624 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-40.30 | ||
DB_remark | PPA-CEC-1 protein; contains similarity to Pfam domain PF00385 (Chromo (CHRromatin Organisation MOdifier) domain); contains similarity to Interpro domains IPR023780 (Chromo domain), IPR016197 (Chromo-like domain superfamily), IPR000953 (Chromo/chromo shadow domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00111859 | ||||
Corresponding_transcript | PPA22305.1 | |||||
Corresponding_protein | PP61518 | |||||
Corresponding_oligo_set | GPL14372_Probes_77857 | |||||
GPL14372_Probes_77858 | ||||||
GPL14372_Probes_77860 | ||||||
Microarray_results | GPL14372_Probes_77857 | |||||
GPL14372_Probes_77858 | ||||||
GPL14372_Probes_77860 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 7.37394 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S41-40.30 | Curator_confirmed | WBPerson4055 | |||
Method | curated |