WormBase Tree Display for CDS: PPA22351
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PPA22351 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-37.22 | ||
TREEFAM | TREEFAM_ID | TF312915 | ||||
DB_remark | contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR003954 (RNA recognition motif domain, eukaryote), IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00111905 | ||||
Corresponding_transcript | PPA22351.1 | |||||
Corresponding_protein | PP56583 | |||||
Corresponding_oligo_set | GPL14372_Probes_85222 | |||||
GPL14372_Probes_85223 | ||||||
Matching_cDNA | AI988960 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_85222 | |||||
GPL14372_Probes_85223 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S41-37.22 | Curator_confirmed | WBPerson4055 | |||
Method | curated |