WormBase Tree Display for CDS: PPA22401
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PPA22401 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (19) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-34.15 | ||
DB_remark | PPA-HCH-1 protein; contains similarity to Pfam domains PF00431 (CUB domain), PF01400 (Astacin (Peptidase family M12A)); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR000859 (CUB domain), IPR035914 (Spermadhesin, CUB domain superfamily), IPR001506 (Peptidase M12A), IPR006026 (Peptidase, metallopeptidase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00111955 | ||||
Corresponding_transcript | PPA22401.1 | |||||
Corresponding_protein | PP58749 | |||||
Corresponding_oligo_set | GPL14372_Probes_85279 | |||||
GPL14372_Probes_85280 | ||||||
GPL14372_Probes_85281 | ||||||
Microarray_results | GPL14372_Probes_85279 | |||||
GPL14372_Probes_85280 | ||||||
GPL14372_Probes_85281 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.68985 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 7.94153 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S41-34.15 | Curator_confirmed | WBPerson4055 | |||
Method | curated |