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WormBase Tree Display for CDS: PPA22404

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Name Class

PPA22404SMapS_parentSequencePPA_ChrI
StructureSource_exons (15)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-9.59
DB_remarkcontains similarity to Pfam domains PF00441 (Acyl-CoA dehydrogenase, C-terminal domain), PF02770 (Acyl-CoA dehydrogenase, middle domain), PF02771 (Acyl-CoA dehydrogenase, N-terminal domain); contains similarity to Interpro domains IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase, C-terminal), IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00111958
Corresponding_transcriptPPA22404.1
Corresponding_proteinPP61824
Corresponding_oligo_setGPL14372_Probes_68662
GPL14372_Probes_68663
GPL14372_Probes_68665
GPL14372_Probes_68666
Matching_cDNAAI986960Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_68662
GPL14372_Probes_68663
GPL14372_Probes_68665
GPL14372_Probes_68666
RNASeq_FPKMWBls:00000326.04015From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010146.3709From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-9.59Curator_confirmedWBPerson4055
Methodcurated