WormBase Tree Display for CDS: PPA22404
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PPA22404 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-9.59 | ||
DB_remark | contains similarity to Pfam domains PF00441 (Acyl-CoA dehydrogenase, C-terminal domain), PF02770 (Acyl-CoA dehydrogenase, middle domain), PF02771 (Acyl-CoA dehydrogenase, N-terminal domain); contains similarity to Interpro domains IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase, C-terminal), IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00111958 | ||||
Corresponding_transcript | PPA22404.1 | |||||
Corresponding_protein | PP61824 | |||||
Corresponding_oligo_set | GPL14372_Probes_68662 | |||||
GPL14372_Probes_68663 | ||||||
GPL14372_Probes_68665 | ||||||
GPL14372_Probes_68666 | ||||||
Matching_cDNA | AI986960 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_68662 | |||||
GPL14372_Probes_68663 | ||||||
GPL14372_Probes_68665 | ||||||
GPL14372_Probes_68666 | ||||||
RNASeq_FPKM | WBls:0000032 | 6.04015 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 46.3709 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-9.59 | Curator_confirmed | WBPerson4055 | |||
Method | curated |