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WormBase Tree Display for CDS: PPA22528

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Name Class

PPA22528SMapS_parentSequencePPA_ChrI
StructureSource_exons (77)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S196-7.31
DB_remarkPPA-DPY-28 protein; contains similarity to Pfam domains PF01112 (Asparaginase), PF12717 (non-SMC mitotic condensation complex subunit 1), PF12922 (non-SMC mitotic condensation complex subunit 1, N-term); contains similarity to Interpro domains IPR000246 (Peptidase T2, asparaginase 2), IPR026971 (Condensin subunit 1/Condensin-2 complex subunit D3), IPR011989 (Armadillo-like helical), IPR007673 (Condensin subunit 1), IPR029055 (Nucleophile aminohydrolases, N-terminal), IPR024324 (Condensin complex subunit 1, N-terminal), IPR036249 (Thioredoxin-like superfamily), IPR032682 (Condensin complex subunit 1, C-terminal), IPR016024 (Armadillo-type fold)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00112082
Corresponding_transcriptPPA22528.1
Corresponding_proteinPP60480
Corresponding_oligo_setGPL14372_Probes_51047
GPL14372_Probes_51048
GPL14372_Probes_51050
GPL14372_Probes_51051
GPL14372_Probes_6904
GPL14372_Probes_6905
Microarray_resultsGPL14372_Probes_6904
GPL14372_Probes_6905
GPL14372_Probes_51047
GPL14372_Probes_51048
GPL14372_Probes_51050
GPL14372_Probes_51051
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S196-7.31Curator_confirmedWBPerson4055
Methodcurated