WormBase Tree Display for CDS: PPA22528
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PPA22528 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (77) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-7.31 | ||
DB_remark | PPA-DPY-28 protein; contains similarity to Pfam domains PF01112 (Asparaginase), PF12717 (non-SMC mitotic condensation complex subunit 1), PF12922 (non-SMC mitotic condensation complex subunit 1, N-term); contains similarity to Interpro domains IPR000246 (Peptidase T2, asparaginase 2), IPR026971 (Condensin subunit 1/Condensin-2 complex subunit D3), IPR011989 (Armadillo-like helical), IPR007673 (Condensin subunit 1), IPR029055 (Nucleophile aminohydrolases, N-terminal), IPR024324 (Condensin complex subunit 1, N-terminal), IPR036249 (Thioredoxin-like superfamily), IPR032682 (Condensin complex subunit 1, C-terminal), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00112082 | ||||
Corresponding_transcript | PPA22528.1 | |||||
Corresponding_protein | PP60480 | |||||
Corresponding_oligo_set | GPL14372_Probes_51047 | |||||
GPL14372_Probes_51048 | ||||||
GPL14372_Probes_51050 | ||||||
GPL14372_Probes_51051 | ||||||
GPL14372_Probes_6904 | ||||||
GPL14372_Probes_6905 | ||||||
Microarray_results | GPL14372_Probes_6904 | |||||
GPL14372_Probes_6905 | ||||||
GPL14372_Probes_51047 | ||||||
GPL14372_Probes_51048 | ||||||
GPL14372_Probes_51050 | ||||||
GPL14372_Probes_51051 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S196-7.31 | Curator_confirmed | WBPerson4055 | |||
Method | curated |