WormBase Tree Display for CDS: PPA22533
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| PPA22533 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (12) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S196-6.1 | ||
| TREEFAM | TREEFAM_ID | TF314960 | ||||
| DB_remark | PPA-GUT-2 protein; contains similarity to Pfam domains PF01423 (LSM domain), PF01974 (tRNA intron endonuclease, catalytic C-terminal domain); contains similarity to Interpro domains IPR001163 (Sm domain, eukaryotic/archaea-type), IPR011856 (tRNA endonuclease-like domain superfamily), IPR036167 (tRNA intron endonuclease, catalytic domain-like superfamily), IPR016654 (U6 snRNA-associated Sm-like protein LSm2), IPR010920 (LSM domain superfamily), IPR006677 (tRNA intron endonuclease, catalytic domain-like) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00112087 | ||||
| Corresponding_transcript | PPA22533.1 | |||||
| Corresponding_protein | PP68667 | |||||
| Corresponding_oligo_set | GPL14372_Probes_51032 | |||||
| GPL14372_Probes_51033 | ||||||
| GPL14372_Probes_51034 | ||||||
| GPL14372_Probes_51036 | ||||||
| GPL14372_Probes_51038 | ||||||
| GPL14372_Probes_51039 | ||||||
| GPL14372_Probes_51040 | ||||||
| GPL14372_Probes_51041 | ||||||
| GPL14372_Probes_51042 | ||||||
| GPL14372_Probes_51044 | ||||||
| Matching_cDNA | AW114952 | Inferred_automatically | transcript_builder.pl | |||
| CO871510 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_51032 | |||||
| GPL14372_Probes_51033 | ||||||
| GPL14372_Probes_51034 | ||||||
| GPL14372_Probes_51036 | ||||||
| GPL14372_Probes_51038 | ||||||
| GPL14372_Probes_51039 | ||||||
| GPL14372_Probes_51040 | ||||||
| GPL14372_Probes_51041 | ||||||
| GPL14372_Probes_51042 | ||||||
| GPL14372_Probes_51044 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 16.6325 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S196-6.1 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
