WormBase Tree Display for CDS: PPA22539
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| PPA22539 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (39) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S196-5.43 | ||
| DB_remark | PPA-PTRN-1.1 protein; contains similarity to Pfam domains PF08683 (Microtubule-binding calmodulin-regulated spectrin-associated), PF11971 (CAMSAP CH domain); contains similarity to Interpro domains IPR038209 (CKK domain superfamily), IPR014797 (CKK domain), IPR022613 (Calmodulin-regulated spectrin-associated protein-like, Calponin-homology domain), IPR036872 (CH domain superfamily), IPR011033 (PRC-barrel-like superfamily), IPR032940 (Calmodulin-regulated spectrin-associated protein) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00112093 | ||||
| Corresponding_transcript | PPA22539.1 | |||||
| Corresponding_protein | PP59451 | |||||
| Corresponding_oligo_set | GPL14372_Probes_58004 | |||||
| GPL14372_Probes_58005 | ||||||
| GPL14372_Probes_58006 | ||||||
| GPL14372_Probes_6883 | ||||||
| GPL14372_Probes_6885 | ||||||
| GPL14372_Probes_6886 | ||||||
| Microarray_results | GPL14372_Probes_6883 | |||||
| GPL14372_Probes_6885 | ||||||
| GPL14372_Probes_6886 | ||||||
| GPL14372_Probes_58004 | ||||||
| GPL14372_Probes_58005 | ||||||
| GPL14372_Probes_58006 | ||||||
| RNASeq_FPKM | WBls:0000032 | 5.98389 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.17777 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S196-5.43 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
