WormBase Tree Display for CDS: PPA22603
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| PPA22603 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (32) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-88.36 | ||
| TREEFAM | TREEFAM_ID | TF314317 | ||||
| DB_remark | contains similarity to Pfam domains PF00106 (short chain dehydrogenase), PF00378 (Enoyl-CoA hydratase/isomerase), PF02036 (SCP-2 sterol transfer family); contains similarity to Interpro domains IPR014748 (Enoyl-CoA hydratase, C-terminal), IPR036291 (NAD(P)-binding domain superfamily), IPR002347 (Short-chain dehydrogenase/reductase SDR), IPR001753 (Enoyl-CoA hydratase/isomerase), IPR029045 (ClpP/crotonase-like domain superfamily), IPR003033 (SCP2 sterol-binding domain), IPR036527 (SCP2 sterol-binding domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00112157 | ||||
| Corresponding_transcript | PPA22603.1 | |||||
| Corresponding_protein | PP71692 | |||||
| Corresponding_oligo_set (12) | ||||||
| Matching_cDNA | FG095706 | Inferred_automatically | transcript_builder.pl | |||
| DV018882 | Inferred_automatically | transcript_builder.pl | ||||
| FG099062 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (12) | ||||||
| RNASeq_FPKM | WBls:0000032 | 41.3417 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 36.6168 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-88.36 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
