WormBase Tree Display for CDS: PPA22620
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| PPA22620 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (21) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-89.34 | ||
| TREEFAM | TREEFAM_ID | TF300537 | ||||
| DB_remark | PPA-MEN-1 protein; contains similarity to Pfam domains PF00390 (Malic enzyme, N-terminal domain), PF03949 (Malic enzyme, NAD binding domain); contains similarity to Interpro domains IPR012301 (Malic enzyme, N-terminal domain), IPR012302 (Malic enzyme, NAD-binding), IPR036291 (NAD(P)-binding domain superfamily), IPR037062 (Malic enzyme, N-terminal domain superfamily), IPR001891 (Malic oxidoreductase) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00112174 | ||||
| Corresponding_transcript | PPA22620.1 | |||||
| Corresponding_protein | PP71365 | |||||
| Corresponding_oligo_set | GPL14372_Probes_63860 | |||||
| GPL14372_Probes_63861 | ||||||
| GPL14372_Probes_63862 | ||||||
| GPL14372_Probes_63863 | ||||||
| GPL14372_Probes_63864 | ||||||
| GPL14372_Probes_63865 | ||||||
| GPL14372_Probes_63866 | ||||||
| Microarray_results | GPL14372_Probes_63860 | |||||
| GPL14372_Probes_63861 | ||||||
| GPL14372_Probes_63862 | ||||||
| GPL14372_Probes_63863 | ||||||
| GPL14372_Probes_63864 | ||||||
| GPL14372_Probes_63865 | ||||||
| GPL14372_Probes_63866 | ||||||
| RNASeq_FPKM | WBls:0000032 | 5.80392 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 2.28483 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-89.34 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
