WormBase Tree Display for CDS: PPA22629
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| PPA22629 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (65) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-90.9 | ||
| TREEFAM | TREEFAM_ID | TF101534 | ||||
| DB_remark | contains similarity to Pfam domains PF00096 (Zinc finger, C2H2 type), PF01287 (Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold), PF01391 (Collagen triple helix repeat (20 copies)), PF06859 (Bicoid-interacting protein 3 (Bin3)), PF13847 (Methyltransferase domain); contains similarity to Interpro domains IPR001884 (Translation elongation factor IF5A-like), IPR020189 (Translation elongation factor, IF5A C-terminal), IPR025714 (Methyltransferase domain), IPR039772 (RNA methyltransferase Bin3-like), IPR008160 (Collagen triple helix repeat), IPR036236 (Zinc finger C2H2 superfamily), IPR008991 (Translation protein SH3-like domain superfamily), IPR010675 (RNA methyltransferase bin3, C-terminal), IPR012340 (Nucleic acid-binding, OB-fold), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR014722 (Large ribosomal subunit protein uL2, domain 2), IPR013087 (Zinc finger C2H2-type) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| End_not_found | ||||||
| Visible | Gene | WBGene00112183 | ||||
| Corresponding_transcript | PPA22629.1 | |||||
| Corresponding_protein | PP66428 | |||||
| Corresponding_oligo_set (20) | ||||||
| Matching_cDNA (57) | ||||||
| Microarray_results (20) | ||||||
| RNASeq_FPKM | WBls:0000032 | 25.5985 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 43.5302 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-90.9 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
